Taming near repeat calculation for crime analysis via cohesive subgraph computing
Published in Geo Processing 2020, 2020
This paper described a graph based near repeat detection method.
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Publications
StreamNet: A DAG System with Streaming Graph Computing
Published in FTC2020, 2020
This paper describe a DAG system that is used to accelerate the block-chain TPS
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Exemplar or matching: modeling DCJ problems with unequal content genome data
Published in JOCO, 2016
This paper compares the two different method to compute DCJ distance with unequal content genome data.
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Navigating the maze of graph analytics frameworks using massive graph datasets
Published in SIGMOD, 2014
This paper described a baseline benchmark to profile graph based applications.
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A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents
Published in COCOON, 2014
This paper described a heuristic to copute DCJ median quickly.
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Enhance the Understanding of Whole-Genome Evolution by Designing, Accelerating and Parallelizing Phylogenetic Algorithms
Published in Georgia Tech Defence, 2014
This is my PhD Dessertation
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Streaming breakpoint graph analytics for accelerating and parallelizing the computation of dcj median of three genomes
Published in ICCS, 2013
This paper utilized algorithm engineering methods to accelerate DCJ median problem.
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On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment
Published in BIBM workshops, 2010
This paper is about how to use CUDA to accelerate the CRF based biological sequence alignment
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A tile-based parallel Viterbi algorithm for biological sequence alignment on GPU with CUDA
Published in IPDPS Workshops, 2010
This paper utilized GPU to accelerate the computation of Gene match based on Viterbi algorithms
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Research on Chinese N-gram Statistical Rule and its Application
Published in YCC, 2008
This paper describes how to extract chinese n-gram
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